J3_8VVP_011

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8VVP|1|WA|A|2398

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVP_011 not in the Motif Atlas

Geometric match to J3_8CRE_013

Geometric discrepancy: 0.0827

The information below is about J3_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8VVP|1|WA|C|2395
8VVP|1|WA|G|2396
8VVP|1|WA|A|2397
8VVP|1|WA|A|2398
8VVP|1|WA|G|2399
8VVP|1|WA|U|2400
8VVP|1|WA|G|2401
*
8VVP|1|WA|C|2807
8VVP|1|WA|A|2808
8VVP|1|WA|A|2809
*
8VVP|1|WA|U|2821
8VVP|1|WA|C|2822
8VVP|1|WA|U|2823
8VVP|1|WA|G|2824

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

L34

Chain Q

eL19