J3_8VVP_031
3D structure
- PDB id
- 8VVP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8VVP|1|ZA|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVP_031 not in the Motif Atlas
- Geometric match to J3_8P9A_074
- Geometric discrepancy: 0.0938
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8VVP|1|ZA|A|938
8VVP|1|ZA|U|939
8VVP|1|ZA|U|940
8VVP|1|ZA|C|941
*
8VVP|1|ZA|G|985
8VVP|1|ZA|G|986
8VVP|1|ZA|A|987
8VVP|1|ZA|C|988
8VVP|1|ZA|C|989
8VVP|1|ZA|A|990
8VVP|1|ZA|G|991
8VVP|1|ZA|A|992
8VVP|1|ZA|G|993
*
8VVP|1|ZA|C|1000
8VVP|1|ZA|A|1001
8VVP|1|ZA|U|1002
8VVP|1|ZA|U|1003
8VVP|1|ZA|U|1004
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain A
- uL3
- Chain AC
- S26
- Chain BB
- S3A
- Chain OA
- eL43
- Chain OB
- S14
Coloring options: