J3_8VVQ_001

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

8VVQ|1|WA|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|C|112
8VVQ|1|WA|A|113
8VVQ|1|WA|G|114
8VVQ|1|WA|C|115
8VVQ|1|WA|G|116
*
8VVQ|1|WA|C|155
8VVQ|1|WA|G|156
8VVQ|1|WA|U|157
8VVQ|1|WA|A|158
8VVQ|1|WA|C|159
8VVQ|1|WA|G|160
*
8VVQ|1|WA|C|275
8VVQ|1|WA|C|276
8VVQ|1|WA|G|277
8VVQ|1|WA|G|278

Current chains

Chain WA

28S rRNA

Nearby chains

Chain G

L7A

Chain GA

L35

Chain HA

L36

Chain K

eL13

Chain M

L15