J3_8VVQ_012
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAAG*CCAUAUC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 8VVQ|1|WA|U|2790, 8VVQ|1|WA|A|2791
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVQ_012 not in the Motif Atlas
- Geometric match to J3_8P9A_054
- Geometric discrepancy: 0.1382
- The information below is about J3_8P9A_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.1
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
8VVQ|1|WA|G|2404
8VVQ|1|WA|A|2405
8VVQ|1|WA|A|2406
8VVQ|1|WA|G|2407
*
8VVQ|1|WA|C|2787
8VVQ|1|WA|C|2788
8VVQ|1|WA|A|2789
8VVQ|1|WA|U|2790
8VVQ|1|WA|A|2791
8VVQ|1|WA|U|2792
8VVQ|1|WA|C|2793
*
8VVQ|1|WA|G|2802
8VVQ|1|WA|U|2803
8VVQ|1|WA|C|2804
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain FA
- L34
- Chain IA
- L37
- Chain KA
- eL39
Coloring options: