J3_8VVQ_017
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVQ_017 not in the Motif Atlas
- Geometric match to J3_8CRE_018
- Geometric discrepancy: 0.1626
- The information below is about J3_8CRE_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_12393.2
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VVQ|1|WA|A|2600
8VVQ|1|WA|G|2601
8VVQ|1|WA|A|2602
8VVQ|1|WA|A|2603
8VVQ|1|WA|G|2604
*
8VVQ|1|WA|C|2739
8VVQ|1|WA|C|2740
*
8VVQ|1|WA|G|2744
8VVQ|1|WA|A|2745
8VVQ|1|WA|A|2746
8VVQ|1|WA|A|2747
8VVQ|1|WA|A|2748
8VVQ|1|WA|U|2749
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain FA
- L34
- Chain OA
- eL43
Coloring options: