J3_8VVQ_018
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CGG*CUGAC*GGACAG
- Length
- 14 nucleotides
- Bulged bases
- 8VVQ|1|WA|G|4078
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVQ_018 not in the Motif Atlas
- Geometric match to J3_5J7L_044
- Geometric discrepancy: 0.1715
- The information below is about J3_5J7L_044
- Detailed Annotation
- Kink-turn 3-way junction
- Broad Annotation
- No text annotation
- Motif group
- J3_89368.5
- Basepair signature
- cWW-tSH-tHW-F-cWW-tHH-cWW
- Number of instances in this motif group
- 3
Unit IDs
8VVQ|1|WA|C|3939
8VVQ|1|WA|G|3940
8VVQ|1|WA|G|3941
*
8VVQ|1|WA|C|4076
8VVQ|1|WA|U|4077
8VVQ|1|WA|G|4078
8VVQ|1|WA|A|4079
8VVQ|1|WA|C|4080
*
8VVQ|1|WA|G|4170
8VVQ|1|WA|G|4171
8VVQ|1|WA|A|4172
8VVQ|1|WA|C|4173
8VVQ|1|WA|A|4174
8VVQ|1|WA|G|4175
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain G
- L7A
- Chain M
- L15
Coloring options: