J3_8VVQ_022
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8VVQ|1|WA|A|4466, 8VVQ|1|WA|U|4467
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVQ_022 not in the Motif Atlas
- Geometric match to J3_8P9A_063
- Geometric discrepancy: 0.0843
- The information below is about J3_8P9A_063
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44047.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8VVQ|1|WA|U|4465
8VVQ|1|WA|A|4466
8VVQ|1|WA|U|4467
8VVQ|1|WA|C|4468
*
8VVQ|1|WA|G|4493
8VVQ|1|WA|U|4494
8VVQ|1|WA|U|4495
*
8VVQ|1|WA|A|4509
8VVQ|1|WA|C|4510
8VVQ|1|WA|U|4511
8VVQ|1|WA|A|4512
8VVQ|1|WA|A|4513
8VVQ|1|WA|U|4514
8VVQ|1|WA|A|4515
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain N
- uL13
- Chain U
- L23
Coloring options: