J3_8VVQ_023

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8VVQ|1|WA|A|4940, 8VVQ|1|WA|C|4942, 8VVQ|1|WA|A|4945, 8VVQ|1|WA|C|4946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|WA|G|4753
8VVQ|1|WA|U|4754
8VVQ|1|WA|U|4755
8VVQ|1|WA|G|4756
*
8VVQ|1|WA|C|4881
8VVQ|1|WA|C|4882
8VVQ|1|WA|U|4883
8VVQ|1|WA|U|4884
8VVQ|1|WA|C|4885
*
8VVQ|1|WA|G|4938
8VVQ|1|WA|C|4939
8VVQ|1|WA|A|4940
8VVQ|1|WA|C|4941
8VVQ|1|WA|C|4942
8VVQ|1|WA|G|4943
8VVQ|1|WA|C|4944
8VVQ|1|WA|A|4945
8VVQ|1|WA|C|4946
8VVQ|1|WA|G|4947
8VVQ|1|WA|U|4948
8VVQ|1|WA|U|4949
8VVQ|1|WA|C|4950

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain EA

eL33

Chain L

eL14

Chain N

uL13