J3_8VVQ_028

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8VVQ|1|ZA|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVQ_028 not in the Motif Atlas

Geometric match to J3_8CRE_072

Geometric discrepancy: 0.0586

The information below is about J3_8CRE_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVQ|1|ZA|A|40
8VVQ|1|ZA|G|41
8VVQ|1|ZA|A|42
8VVQ|1|ZA|U|43
8VVQ|1|ZA|U|44
8VVQ|1|ZA|A|45
8VVQ|1|ZA|A|46
8VVQ|1|ZA|G|47
*
8VVQ|1|ZA|C|479
8VVQ|1|ZA|G|480
8VVQ|1|ZA|C|481
8VVQ|1|ZA|G|482
8VVQ|1|ZA|C|483
8VVQ|1|ZA|A|484
8VVQ|1|ZA|A|485
8VVQ|1|ZA|A|486
8VVQ|1|ZA|U|487
*
8VVQ|1|ZA|A|512
8VVQ|1|ZA|G|513
8VVQ|1|ZA|U|514

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain HC

eukaryotic elongation factor 1A

Chain JB

S9

Chain XB

S23