J3_8VVQ_032

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

8VVQ|1|ZA|C|1138, 8VVQ|1|ZA|A|1150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|ZA|C|1094
8VVQ|1|ZA|C|1095
8VVQ|1|ZA|G|1096
*
8VVQ|1|ZA|U|1136
8VVQ|1|ZA|U|1137
8VVQ|1|ZA|C|1138
8VVQ|1|ZA|C|1139
8VVQ|1|ZA|G|1140
*
8VVQ|1|ZA|C|1147
8VVQ|1|ZA|A|1148
8VVQ|1|ZA|A|1149
8VVQ|1|ZA|A|1150
8VVQ|1|ZA|G|1151

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

RPSA

Chain AC

S26

Chain BC

S27

Chain CB

S2-like

Chain VB

S21

Chain WB

S15A