J3_8VVQ_036

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

8VVQ|1|ZA|G|1274, 8VVQ|1|ZA|G|1507, 8VVQ|1|ZA|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVQ|1|ZA|C|1273
8VVQ|1|ZA|G|1274
8VVQ|1|ZA|G|1275
8VVQ|1|ZA|A|1276
8VVQ|1|ZA|C|1277
*
8VVQ|1|ZA|G|1320
8VVQ|1|ZA|G|1321
8VVQ|1|ZA|G|1322
8VVQ|1|ZA|U|1323
8VVQ|1|ZA|G|1324
*
8VVQ|1|ZA|U|1504
8VVQ|1|ZA|U|1505
8VVQ|1|ZA|A|1506
8VVQ|1|ZA|G|1507
8VVQ|1|ZA|A|1508
8VVQ|1|ZA|U|1509
8VVQ|1|ZA|G|1510

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DC

uS14

Chain FC

S27A

Chain KB

S10