J3_8VVQ_038

3D structure

PDB id

8VVQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVQ_038 not in the Motif Atlas

Geometric match to J3_8CRE_083

Geometric discrepancy: 0.1046

The information below is about J3_8CRE_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8VVQ|1|ZA|U|1350
8VVQ|1|ZA|G|1351
*
8VVQ|1|ZA|U|1360
8VVQ|1|ZA|G|1361
8VVQ|1|ZA|U|1362
8VVQ|1|ZA|C|1363
*
8VVQ|1|ZA|G|1375
8VVQ|1|ZA|A|1376
8VVQ|1|ZA|U|1377
8VVQ|1|ZA|A|1378
8VVQ|1|ZA|A|1379

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

RPSA

Chain CB

S2-like

Chain RB

eS17