J3_8VVQ_040
3D structure
- PDB id
- 8VVQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Codon sampling state of elongation inhibitor-treated mammalian ribosomes obtained from merged datasets
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8VVQ|1|ZA|U|1535, 8VVQ|1|ZA|G|1603
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVQ_040 not in the Motif Atlas
- Geometric match to J3_4LFB_009
- Geometric discrepancy: 0.1632
- The information below is about J3_4LFB_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03192.1
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
8VVQ|1|ZA|C|1532
8VVQ|1|ZA|A|1533
8VVQ|1|ZA|C|1534
8VVQ|1|ZA|U|1535
8VVQ|1|ZA|G|1536
*
8VVQ|1|ZA|C|1597
8VVQ|1|ZA|G|1598
8VVQ|1|ZA|U|1599
8VVQ|1|ZA|G|1600
8VVQ|1|ZA|A|1601
8VVQ|1|ZA|U|1602
8VVQ|1|ZA|G|1603
8VVQ|1|ZA|G|1604
*
8VVQ|1|ZA|C|1635
8VVQ|1|ZA|G|1636
8VVQ|1|ZA|A|1637
8VVQ|1|ZA|G|1638
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain FB
- S5
- Chain SB
- S18
- Chain TA
- Transfer RNA; tRNA
- Chain TB
- S19
- Chain ZB
- eS25
Coloring options: