J3_8VVR_023
3D structure
- PDB id
- 8VVR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Post-decoding/Post-hydrolysis state obtained from Anisomycin-treated mammalian ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCAUAC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8VVR|1|XA|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVR_023 not in the Motif Atlas
- Geometric match to J3_8OI5_025
- Geometric discrepancy: 0.0913
- The information below is about J3_8OI5_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8VVR|1|XA|C|9
8VVR|1|XA|C|10
8VVR|1|XA|A|11
8VVR|1|XA|U|12
8VVR|1|XA|A|13
8VVR|1|XA|C|14
*
8VVR|1|XA|G|65
8VVR|1|XA|G|66
*
8VVR|1|XA|U|109
8VVR|1|XA|G|110
Current chains
- Chain XA
- 5S rRNA
Nearby chains
- Chain D
- uL18
- Chain I
- L10
- Chain S
- eL21
- Chain WA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: