J3_8VVT_007
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UGA(A2M)CUA*UAG*CGAA
- Length
- 14 nucleotides
- Bulged bases
- 8VVT|1|WA|A2M|1539, 8VVT|1|WA|G|1646, 8VVT|1|WA|A|1647
- QA status
- Modified nucleotides: A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVT_007 not in the Motif Atlas
- Geometric match to J3_8P9A_049
- Geometric discrepancy: 0.0654
- The information below is about J3_8P9A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46658.1
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8VVT|1|WA|U|1536
8VVT|1|WA|G|1537
8VVT|1|WA|A|1538
8VVT|1|WA|A2M|1539
8VVT|1|WA|C|1540
8VVT|1|WA|U|1541
8VVT|1|WA|A|1542
*
8VVT|1|WA|U|1627
8VVT|1|WA|A|1628
8VVT|1|WA|G|1629
*
8VVT|1|WA|C|1645
8VVT|1|WA|G|1646
8VVT|1|WA|A|1647
8VVT|1|WA|A|1648
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- L8
- Chain IA
- L37
- Chain KA
- eL39
- Chain M
- L15
Coloring options: