J3_8VVT_008
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAG*CG(PSU)AG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 8VVT|1|WA|A|1618
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVT_008 not in the Motif Atlas
- Geometric match to J3_8P9A_050
- Geometric discrepancy: 0.1749
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8VVT|1|WA|G|1550
8VVT|1|WA|C|1551
8VVT|1|WA|A|1552
8VVT|1|WA|G|1553
*
8VVT|1|WA|C|1585
8VVT|1|WA|G|1586
8VVT|1|WA|PSU|1587
8VVT|1|WA|A|1588
8VVT|1|WA|G|1589
*
8VVT|1|WA|U|1614
8VVT|1|WA|C|1615
8VVT|1|WA|C|1616
8VVT|1|WA|G|1617
8VVT|1|WA|A|1618
8VVT|1|WA|C|1619
Current chains
- Chain WA
- 28S rRNA
Nearby chains
- Chain A
- L8
- Chain FA
- eL34
- Chain OA
- eL43
- Chain Q
- eL19
Coloring options: