J3_8VVT_012

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAG*C(B9H)AUAUC*GUC

Length

14 nucleotides

Bulged bases

8VVT|1|WA|U|2793, 8VVT|1|WA|A|2794, 8VVT|1|WA|U|2795

QA status

Modified nucleotides: B9H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVT_012 not in the Motif Atlas

Geometric match to J3_8P9A_054

Geometric discrepancy: 0.148

The information below is about J3_8P9A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

8VVT|1|WA|G|2407
8VVT|1|WA|A|2408
8VVT|1|WA|A|2409
8VVT|1|WA|G|2410
*
8VVT|1|WA|C|2790
8VVT|1|WA|B9H|2791
8VVT|1|WA|A|2792
8VVT|1|WA|U|2793
8VVT|1|WA|A|2794
8VVT|1|WA|U|2795
8VVT|1|WA|C|2796
*
8VVT|1|WA|G|2805
8VVT|1|WA|U|2806
8VVT|1|WA|C|2807

Current chains

Chain WA

28S rRNA

Nearby chains

Chain FA

eL34

Chain IA

L37

Chain KA

eL39