J3_8VVT_020

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUC*GUU*ACUAAUA

Length

14 nucleotides

Bulged bases

8VVT|1|WA|A|4469, 8VVT|1|WA|U|4470

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVT_020 not in the Motif Atlas

Geometric match to J3_8CRE_023

Geometric discrepancy: 0.1031

The information below is about J3_8CRE_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_62630.1

Basepair signature

cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F

Number of instances in this motif group

2

Unit IDs

8VVT|1|WA|U|4468
8VVT|1|WA|A|4469
8VVT|1|WA|U|4470
8VVT|1|WA|C|4471
*
8VVT|1|WA|G|4496
8VVT|1|WA|U|4497
8VVT|1|WA|U|4498
*
8VVT|1|WA|A|4512
8VVT|1|WA|C|4513
8VVT|1|WA|U|4514
8VVT|1|WA|A|4515
8VVT|1|WA|A|4516
8VVT|1|WA|U|4517
8VVT|1|WA|A|4518

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain N

uL13

Chain U

L23