J3_8VVT_025

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVT_025 not in the Motif Atlas

Geometric match to J3_8CRE_071

Geometric discrepancy: 0.1047

The information below is about J3_8CRE_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVT|1|ZA|A|40
8VVT|1|ZA|G|41
*
8VVT|1|ZA|C|481
8VVT|1|ZA|G|482
8VVT|1|ZA|C|483
8VVT|1|ZA|A|484
8VVT|1|ZA|A|485
8VVT|1|ZA|A|486
8VVT|1|ZA|U|487
*
8VVT|1|ZA|A|512
8VVT|1|ZA|G|513
8VVT|1|ZA|U|514

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain JB

S9

Chain XB

uS12

Chain v

eukaryotic elongation factor 2