J3_8VVT_026

3D structure

PDB id

8VVT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the rotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAG*CAG*CUGGAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVT_026 not in the Motif Atlas

Geometric match to J3_8P9A_073

Geometric discrepancy: 0.2087

The information below is about J3_8P9A_073

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97642.2

Basepair signature

cWW-tSH-F-F-cWW-F-tWW-cWW

Number of instances in this motif group

3

Unit IDs

8VVT|1|ZA|A|816
8VVT|1|ZA|G|817
8VVT|1|ZA|A|818
8VVT|1|ZA|G|819
*
8VVT|1|ZA|C|829
8VVT|1|ZA|A|830
8VVT|1|ZA|G|831
*
8VVT|1|ZA|C|843
8VVT|1|ZA|U|844
8VVT|1|ZA|G|845
8VVT|1|ZA|G|846
8VVT|1|ZA|A|847
8VVT|1|ZA|U|848

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain EB

eS4

Chain JB

S9

Chain YB

eS24