J3_8VVT_031
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 8VVT|1|ZA|G|1256, 8VVT|1|ZA|A|1258, 8VVT|1|ZA|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVT_031 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.2076
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VVT|1|ZA|C|1237
8VVT|1|ZA|U|1238
8VVT|1|ZA|U|1239
8VVT|1|ZA|A|1240
8VVT|1|ZA|A|1241
8VVT|1|ZA|U|1242
8VVT|1|ZA|PSU|1243
8VVT|1|ZA|U|1244
*
8VVT|1|ZA|G|1255
8VVT|1|ZA|G|1256
8VVT|1|ZA|G|1257
8VVT|1|ZA|A|1258
8VVT|1|ZA|A|1259
8VVT|1|ZA|A|1260
8VVT|1|ZA|C|1261
8VVT|1|ZA|C|1262
8VVT|1|ZA|U|1263
8VVT|1|ZA|C|1264
8VVT|1|ZA|A|1265
8VVT|1|ZA|C|1266
*
8VVT|1|ZA|G|1516
8VVT|1|ZA|G|1517
8VVT|1|ZA|C|1518
8VVT|1|ZA|U|1519
8VVT|1|ZA|G|1520
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain DC
- uS14
- Chain PB
- uS19
- Chain SB
- uS13
- Chain UB
- uS10
- Chain w
- Serpine mRNA binding protein 1
Coloring options: