J3_8VVT_032
3D structure
- PDB id
- 8VVT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the rotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 8VVT|1|ZA|G|1274, 8VVT|1|ZA|G|1507, 8VVT|1|ZA|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVT_032 not in the Motif Atlas
- Geometric match to J3_8CRE_081
- Geometric discrepancy: 0.1226
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.2
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8VVT|1|ZA|C|1272
8VVT|1|ZA|C|1273
8VVT|1|ZA|G|1274
8VVT|1|ZA|G|1275
8VVT|1|ZA|A|1276
8VVT|1|ZA|C|1277
*
8VVT|1|ZA|G|1320
8VVT|1|ZA|G|1321
8VVT|1|ZA|G|1322
8VVT|1|ZA|U|1323
8VVT|1|ZA|G|1324
*
8VVT|1|ZA|U|1504
8VVT|1|ZA|U|1505
8VVT|1|ZA|A|1506
8VVT|1|ZA|G|1507
8VVT|1|ZA|A|1508
8VVT|1|ZA|U|1509
8VVT|1|ZA|G|1510
Current chains
- Chain ZA
- 18S rRNA
Nearby chains
- Chain DC
- uS14
- Chain FC
- S27A
- Chain KB
- eS10
- Chain v
- eukaryotic elongation factor 2
Coloring options: