J3_8VVU_014

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8VVU|1|WA|U|2556, 8VVU|1|WA|U|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|A|2553
8VVU|1|WA|G|2554
8VVU|1|WA|A|2555
8VVU|1|WA|U|2556
8VVU|1|WA|G|2557
*
8VVU|1|WA|C|2574
8VVU|1|WA|A|2575
8VVU|1|WA|G|2576
8VVU|1|WA|U|2577
*
8VVU|1|WA|A|2759
8VVU|1|WA|G|2760
8VVU|1|WA|G|2761
8VVU|1|WA|G|2762
8VVU|1|WA|U|2763
8VVU|1|WA|G|2764
8VVU|1|WA|U|2765
8VVU|1|WA|A|2766
8VVU|1|WA|A|2767
8VVU|1|WA|A|2768
8VVU|1|WA|U|2769

Current chains

Chain WA

28S rRNA

Nearby chains

Chain Y

L27