J3_8VVU_017

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

8VVU|1|WA|G|4078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVU_017 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.2179

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8VVU|1|WA|C|3939
8VVU|1|WA|G|3940
8VVU|1|WA|G|3941
*
8VVU|1|WA|C|4076
8VVU|1|WA|U|4077
8VVU|1|WA|G|4078
8VVU|1|WA|A|4079
8VVU|1|WA|C|4080
*
8VVU|1|WA|G|4170
8VVU|1|WA|G|4171
8VVU|1|WA|A|4172
8VVU|1|WA|C|4173
8VVU|1|WA|A|4174
8VVU|1|WA|G|4175

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain G

L7A

Chain M

L15