J3_8VVU_022

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8VVU|1|WA|A|4940, 8VVU|1|WA|C|4942, 8VVU|1|WA|A|4945, 8VVU|1|WA|C|4946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVU|1|WA|G|4753
8VVU|1|WA|U|4754
8VVU|1|WA|U|4755
8VVU|1|WA|G|4756
*
8VVU|1|WA|C|4881
8VVU|1|WA|C|4882
8VVU|1|WA|U|4883
8VVU|1|WA|U|4884
8VVU|1|WA|C|4885
*
8VVU|1|WA|G|4938
8VVU|1|WA|C|4939
8VVU|1|WA|A|4940
8VVU|1|WA|C|4941
8VVU|1|WA|C|4942
8VVU|1|WA|G|4943
8VVU|1|WA|C|4944
8VVU|1|WA|A|4945
8VVU|1|WA|C|4946
8VVU|1|WA|G|4947
8VVU|1|WA|U|4948
8VVU|1|WA|U|4949
8VVU|1|WA|C|4950

Current chains

Chain WA

28S rRNA

Nearby chains

Chain E

L6

Chain EA

eL33

Chain L

eL14

Chain N

uL13