J3_8VVU_035

3D structure

PDB id

8VVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Anisomycin-bound mammalian ribosome with partially accommodated A-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAC*GGGUG*UUAGAUG

Length

17 nucleotides

Bulged bases

8VVU|1|ZA|G|1274, 8VVU|1|ZA|G|1507, 8VVU|1|ZA|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVU_035 not in the Motif Atlas

Homologous match to J3_9PN5_038

Geometric discrepancy: 0.5415

The information below is about J3_9PN5_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_87797.4

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8VVU|1|ZA|C|1273
8VVU|1|ZA|G|1274
8VVU|1|ZA|G|1275
8VVU|1|ZA|A|1276
8VVU|1|ZA|C|1277
*
8VVU|1|ZA|G|1320
8VVU|1|ZA|G|1321
8VVU|1|ZA|G|1322
8VVU|1|ZA|U|1323
8VVU|1|ZA|G|1324
*
8VVU|1|ZA|U|1504
8VVU|1|ZA|U|1505
8VVU|1|ZA|A|1506
8VVU|1|ZA|G|1507
8VVU|1|ZA|A|1508
8VVU|1|ZA|U|1509
8VVU|1|ZA|G|1510

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain DC

uS14

Chain FC

S27A

Chain KB

S10