J3_8VVV_009
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCAG*CG(PSU)AG*UCCGAC
- Length
- 15 nucleotides
- Bulged bases
- 8VVV|1|5|A|1619
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_009 not in the Motif Atlas
- Geometric match to J3_8P9A_050
- Geometric discrepancy: 0.1607
- The information below is about J3_8P9A_050
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_21998.1
- Basepair signature
- cWW-tSH-F-F-tHS-cWW-cWW-F-F
- Number of instances in this motif group
- 1
Unit IDs
8VVV|1|5|G|1551
8VVV|1|5|C|1552
8VVV|1|5|A|1553
8VVV|1|5|G|1554
*
8VVV|1|5|C|1586
8VVV|1|5|G|1587
8VVV|1|5|PSU|1588
8VVV|1|5|A|1589
8VVV|1|5|G|1590
*
8VVV|1|5|U|1615
8VVV|1|5|C|1616
8VVV|1|5|C|1617
8VVV|1|5|G|1618
8VVV|1|5|A|1619
8VVV|1|5|C|1620
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain R
- eL19
- Chain g
- eL34
- Chain p
- eL43
Coloring options: