J3_8VVV_011

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAU*GCUAAGG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVV_011 not in the Motif Atlas

Geometric match to J3_5J7L_040

Geometric discrepancy: 0.2205

The information below is about J3_5J7L_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28621.5

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

7

Unit IDs

8VVV|1|5|G|1975
8VVV|1|5|A|1976
8VVV|1|5|U|1977
*
8VVV|1|5|G|2001
8VVV|1|5|C|2002
8VVV|1|5|U|2003
8VVV|1|5|A|2004
8VVV|1|5|A|2005
8VVV|1|5|G|2006
8VVV|1|5|G|2007
*
8VVV|1|5|C|2022
8VVV|1|5|A|2023
8VVV|1|5|C|2024

Current chains

Chain 5

28S rRNA

Nearby chains

Chain s

uL10

Chain t

eL11