J3_8VVV_012
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAAGUG*CAA*UCUG
- Length
- 14 nucleotides
- Bulged bases
- 8VVV|1|5|A|2402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_012 not in the Motif Atlas
- Geometric match to J3_8P9A_053
- Geometric discrepancy: 0.1192
- The information below is about J3_8P9A_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05025.1
- Basepair signature
- cWW-tSH-tWW-tHW-cWW-F-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8VVV|1|5|C|2399
8VVV|1|5|G|2400
8VVV|1|5|A|2401
8VVV|1|5|A|2402
8VVV|1|5|G|2403
8VVV|1|5|U|2404
8VVV|1|5|G|2405
*
8VVV|1|5|C|2811
8VVV|1|5|A|2812
8VVV|1|5|A|2813
*
8VVV|1|5|U|2825
8VVV|1|5|C|2826
8VVV|1|5|U|2827
8VVV|1|5|G|2828
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain R
- eL19
- Chain g
- eL34
Coloring options: