J3_8VVV_013

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*C(B9H)AUAUC*GUC

Length

14 nucleotides

Bulged bases

8VVV|1|5|U|2794, 8VVV|1|5|A|2795, 8VVV|1|5|U|2796

QA status

Modified nucleotides: B9H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVV_013 not in the Motif Atlas

Geometric match to J3_8CRE_014

Geometric discrepancy: 0.2724

The information below is about J3_8CRE_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_19545.2

Basepair signature

cWW-F-F-tHS-cWW-cWW-F-F

Number of instances in this motif group

6

Unit IDs

8VVV|1|5|G|2408
8VVV|1|5|A|2409
8VVV|1|5|A|2410
8VVV|1|5|G|2411
*
8VVV|1|5|C|2791
8VVV|1|5|B9H|2792
8VVV|1|5|A|2793
8VVV|1|5|U|2794
8VVV|1|5|A|2795
8VVV|1|5|U|2796
8VVV|1|5|C|2797
*
8VVV|1|5|G|2806
8VVV|1|5|U|2807
8VVV|1|5|C|2808

Current chains

Chain 5

28S rRNA

Nearby chains

Chain g

eL34

Chain j

eL37

Chain l

eL39