J3_8VVV_014
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCGGUC*GGAGU*AA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_014 not in the Motif Atlas
- Geometric match to J3_8P9A_055
- Geometric discrepancy: 0.1622
- The information below is about J3_8P9A_055
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_94309.1
- Basepair signature
- cWW-F-cWW-F-F-F-F-F-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8VVV|1|5|U|2446
8VVV|1|5|C|2447
8VVV|1|5|G|2448
8VVV|1|5|G|2449
8VVV|1|5|U|2450
8VVV|1|5|C|2451
*
8VVV|1|5|G|2521
8VVV|1|5|G|2522
8VVV|1|5|A|2523
8VVV|1|5|G|2524
8VVV|1|5|U|2525
*
8VVV|1|5|A|2542
8VVV|1|5|A|2543
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain X
- uL23
- Chain g
- eL34
- Chain k
- eL38
- Chain l
- eL39
Coloring options: