J3_8VVV_016

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8VVV|1|5|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|5|A|2557
8VVV|1|5|G|2558
8VVV|1|5|A|2559
8VVV|1|5|U|2560
8VVV|1|5|G|2561
*
8VVV|1|5|C|2578
8VVV|1|5|A|2579
8VVV|1|5|G|2580
8VVV|1|5|U|2581
*
8VVV|1|5|A|2763
8VVV|1|5|G|2764
8VVV|1|5|G|2765
8VVV|1|5|G|2766
8VVV|1|5|U|2767
8VVV|1|5|G|2768
8VVV|1|5|U|2769
8VVV|1|5|A|2770
8VVV|1|5|A|2771
8VVV|1|5|A|2772
8VVV|1|5|U|2773

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

L27