J3_8VVV_017

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVV_017 not in the Motif Atlas

Geometric match to J3_8P9A_087

Geometric discrepancy: 0.2371

The information below is about J3_8P9A_087

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_05348.1

Basepair signature

cWW-cWW-cWW-F-F-F

Number of instances in this motif group

5

Unit IDs

8VVV|1|5|U|2581
8VVV|1|5|G|2582
*
8VVV|1|5|C|2591
8VVV|1|5|G|2592
8VVV|1|5|A|2593
8VVV|1|5|C|2594
8VVV|1|5|C|2595
*
8VVV|1|5|G|2762
8VVV|1|5|A|2763

Current chains

Chain 5

28S rRNA

Nearby chains

Chain Z

L27

Chain g

eL34