J3_8VVV_018
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AGAAG*CC*GAAAAU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_018 not in the Motif Atlas
- Geometric match to J3_8P9A_058
- Geometric discrepancy: 0.1634
- The information below is about J3_8P9A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08594.1
- Basepair signature
- cWW-tSH-tHH-F-F-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
8VVV|1|5|A|2604
8VVV|1|5|G|2605
8VVV|1|5|A|2606
8VVV|1|5|A|2607
8VVV|1|5|G|2608
*
8VVV|1|5|C|2743
8VVV|1|5|C|2744
*
8VVV|1|5|G|2748
8VVV|1|5|A|2749
8VVV|1|5|A|2750
8VVV|1|5|A|2751
8VVV|1|5|A|2752
8VVV|1|5|U|2753
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain g
- eL34
- Chain p
- eL43
Coloring options: