J3_8VVV_019

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

8VVV|1|5|G|4082

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVV_019 not in the Motif Atlas

Geometric match to J3_5J7L_044

Geometric discrepancy: 0.2038

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn 3-way junction

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8VVV|1|5|C|3943
8VVV|1|5|G|3944
8VVV|1|5|G|3945
*
8VVV|1|5|C|4080
8VVV|1|5|U|4081
8VVV|1|5|G|4082
8VVV|1|5|A|4083
8VVV|1|5|C|4084
*
8VVV|1|5|G|4174
8VVV|1|5|G|4175
8VVV|1|5|A|4176
8VVV|1|5|C|4177
8VVV|1|5|A|4178
8VVV|1|5|G|4179

Current chains

Chain 5

28S rRNA

Nearby chains

Chain A

uL2

Chain G

eL8

Chain N

eL15