J3_8VVV_023
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UAUC*GUU*ACUAAUA
- Length
- 14 nucleotides
- Bulged bases
- 8VVV|1|5|A|4470, 8VVV|1|5|U|4471
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_023 not in the Motif Atlas
- Geometric match to J3_8CRE_023
- Geometric discrepancy: 0.1444
- The information below is about J3_8CRE_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_62630.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWW-tSS-F-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
8VVV|1|5|U|4469
8VVV|1|5|A|4470
8VVV|1|5|U|4471
8VVV|1|5|C|4472
*
8VVV|1|5|G|4497
8VVV|1|5|U|4498
8VVV|1|5|U|4499
*
8VVV|1|5|A|4513
8VVV|1|5|C|4514
8VVV|1|5|U|4515
8VVV|1|5|A|4516
8VVV|1|5|A|4517
8VVV|1|5|U|4518
8VVV|1|5|A|4519
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain O
- uL13
- Chain V
- L23
Coloring options: