J3_8VVV_036
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 8VVV|1|9|G|1256, 8VVV|1|9|A|1258, 8VVV|1|9|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_036 not in the Motif Atlas
- Geometric match to J3_8CRE_080
- Geometric discrepancy: 0.1781
- The information below is about J3_8CRE_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8VVV|1|9|C|1237
8VVV|1|9|U|1238
8VVV|1|9|U|1239
8VVV|1|9|A|1240
8VVV|1|9|A|1241
8VVV|1|9|U|1242
8VVV|1|9|PSU|1243
8VVV|1|9|U|1244
*
8VVV|1|9|G|1255
8VVV|1|9|G|1256
8VVV|1|9|G|1257
8VVV|1|9|A|1258
8VVV|1|9|A|1259
8VVV|1|9|A|1260
8VVV|1|9|C|1261
8VVV|1|9|C|1262
8VVV|1|9|U|1263
8VVV|1|9|C|1264
8VVV|1|9|A|1265
8VVV|1|9|C|1266
*
8VVV|1|9|G|1516
8VVV|1|9|G|1517
8VVV|1|9|C|1518
8VVV|1|9|U|1519
8VVV|1|9|G|1520
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain PP
- uS19
- Chain SS
- uS13
- Chain UU
- uS10
- Chain dd
- uS14
Coloring options: