J3_8VVV_037
3D structure
- PDB id
- 8VVV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ribosomes bound to Anisomycin in the nonrotated conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 8VVV|1|9|G|1274, 8VVV|1|9|G|1507, 8VVV|1|9|U|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VVV_037 not in the Motif Atlas
- Geometric match to J3_8CRE_081
- Geometric discrepancy: 0.1103
- The information below is about J3_8CRE_081
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_87797.2
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8VVV|1|9|C|1272
8VVV|1|9|C|1273
8VVV|1|9|G|1274
8VVV|1|9|G|1275
8VVV|1|9|A|1276
8VVV|1|9|C|1277
*
8VVV|1|9|G|1320
8VVV|1|9|G|1321
8VVV|1|9|G|1322
8VVV|1|9|U|1323
8VVV|1|9|G|1324
*
8VVV|1|9|U|1504
8VVV|1|9|U|1505
8VVV|1|9|A|1506
8VVV|1|9|G|1507
8VVV|1|9|A|1508
8VVV|1|9|U|1509
8VVV|1|9|G|1510
Current chains
- Chain 9
- 18S rRNA
Nearby chains
- Chain KK
- eS10
- Chain dd
- uS14
- Chain ff
- eS31
- Chain v
- eukaryotic elongation factor 2
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