J3_8VVV_038

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUAG*CGAGAC*GCAAUA

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVV|1|9|U|1340
8VVV|1|9|C|1341
8VVV|1|9|U|1342
8VVV|1|9|U|1343
8VVV|1|9|A|1344
8VVV|1|9|G|1345
*
8VVV|1|9|C|1384
8VVV|1|9|G|1385
8VVV|1|9|A|1386
8VVV|1|9|G|1387
8VVV|1|9|A|1388
8VVV|1|9|C|1389
*
8VVV|1|9|G|1481
8VVV|1|9|C|1482
8VVV|1|9|A|1483
8VVV|1|9|A|1484
8VVV|1|9|U|1485
8VVV|1|9|A|1486

Current chains

Chain 9

18S rRNA

Nearby chains

Chain CC

eS1

Chain DD

uS3

Chain QQ

uS9

Chain RR

eS17

Chain UU

uS10

Chain dd

uS14