J3_8VVV_041

3D structure

PDB id

8VVV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ribosomes bound to Anisomycin in the nonrotated conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

8VVV|1|9|U|1535, 8VVV|1|9|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VVV_041 not in the Motif Atlas

Geometric match to J3_4LFB_009

Geometric discrepancy: 0.1897

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03192.1

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F

Number of instances in this motif group

5

Unit IDs

8VVV|1|9|C|1532
8VVV|1|9|A|1533
8VVV|1|9|C|1534
8VVV|1|9|U|1535
8VVV|1|9|G|1536
*
8VVV|1|9|C|1597
8VVV|1|9|G|1598
8VVV|1|9|U|1599
8VVV|1|9|G|1600
8VVV|1|9|A|1601
8VVV|1|9|U|1602
8VVV|1|9|G|1603
8VVV|1|9|G|1604
*
8VVV|1|9|C|1635
8VVV|1|9|G|1636
8VVV|1|9|A|1637
8VVV|1|9|G|1638

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain SS

uS13

Chain TT

eS19

Chain ZZ

eS25