J3_8VWQ_011
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGGACG*CC*GAAAAGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8VWQ_011 not in the Motif Atlas
- Geometric match to J3_5J7L_069
- Geometric discrepancy: 0.077
- The information below is about J3_5J7L_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_34864.2
- Basepair signature
- cWW-F-cWW-F-tHH-F-tHS-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8VWQ|1|1|G|1424
8VWQ|1|1|G|1425
8VWQ|1|1|G|1426
8VWQ|1|1|A|1427
8VWQ|1|1|C|1428
8VWQ|1|1|G|1429
*
8VWQ|1|1|C|1564
8VWQ|1|1|C|1565
*
8VWQ|1|1|G|1568
8VWQ|1|1|A|1569
8VWQ|1|1|A|1570
8VWQ|1|1|A|1571
8VWQ|1|1|A|1572
8VWQ|1|1|G|1573
8VWQ|1|1|C|1574
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L2
Coloring options: