J3_8VWQ_019

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

8VWQ|1|2|C|48, 8VWQ|1|2|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VWQ_019 not in the Motif Atlas

Geometric match to J3_5J7L_050

Geometric discrepancy: 0.0687

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8VWQ|1|2|G|46
8VWQ|1|2|C|47
8VWQ|1|2|C|48
8VWQ|1|2|U|49
8VWQ|1|2|A|50
8VWQ|1|2|A|51
8VWQ|1|2|C|52
*
8VWQ|1|2|G|359
8VWQ|1|2|G|360
8VWQ|1|2|G|361
8VWQ|1|2|G|362
8VWQ|1|2|A|363
8VWQ|1|2|A|364
8VWQ|1|2|U|365
8VWQ|1|2|A|366
8VWQ|1|2|U|367
*
8VWQ|1|2|A|393
8VWQ|1|2|G|394
8VWQ|1|2|C|395

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

Small ribosomal subunit protein uS12

Chain u

30S ribosomal protein S16