J3_8VWQ_028

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

8VWQ|1|2|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8VWQ_028 not in the Motif Atlas

Geometric match to J3_8B0X_029

Geometric discrepancy: 0.1152

The information below is about J3_8B0X_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

8VWQ|1|2|C|990
8VWQ|1|2|U|991
8VWQ|1|2|U|992
8VWQ|1|2|G|993
8VWQ|1|2|A|994
8VWQ|1|2|C|995
8VWQ|1|2|A|996
8VWQ|1|2|U|997
*
8VWQ|1|2|A|1044
8VWQ|1|2|C|1045
8VWQ|1|2|A|1046
8VWQ|1|2|G|1047
*
8VWQ|1|2|C|1210
8VWQ|1|2|U|1211
8VWQ|1|2|U|1212
8VWQ|1|2|A|1213
8VWQ|1|2|C|1214
8VWQ|1|2|G|1215

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain s

Small ribosomal subunit protein uS14