J3_8W2N_024

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

8W2N|1|2|U|871, 8W2N|1|2|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8W2N_024 not in the Motif Atlas

Geometric match to J3_5J7L_004

Geometric discrepancy: 0.0773

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

8W2N|1|2|C|826
8W2N|1|2|U|827
8W2N|1|2|U|828
8W2N|1|2|G|829
*
8W2N|1|2|C|857
8W2N|1|2|G|858
8W2N|1|2|G|859
8W2N|1|2|A|860
8W2N|1|2|G|861
*
8W2N|1|2|C|868
8W2N|1|2|G|869
8W2N|1|2|U|870
8W2N|1|2|U|871
8W2N|1|2|A|872
8W2N|1|2|A|873
8W2N|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21