J3_8WHY_008
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 8WHY|1|A|C|2558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WHY_008 not in the Motif Atlas
- Homologous match to J3_4WF9_008
- Geometric discrepancy: 0.1632
- The information below is about J3_4WF9_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.1
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 10
Unit IDs
8WHY|1|A|C|2519
8WHY|1|A|U|2520
8WHY|1|A|C|2521
*
8WHY|1|A|G|2545
8WHY|1|A|A|2546
8WHY|1|A|G|2547
*
8WHY|1|A|C|2556
8WHY|1|A|A|2557
8WHY|1|A|C|2558
8WHY|1|A|A|2559
8WHY|1|A|A|2560
8WHY|1|A|G|2561
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 50S ribosomal protein L5
- Chain R
- 50S ribosomal protein L18
- Chain Z
- 50S ribosomal protein L27
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