J3_8WHY_012

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WHY_012 not in the Motif Atlas

Geometric match to J3_5J7L_036

Geometric discrepancy: 0.075

The information below is about J3_5J7L_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_60031.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

7

Unit IDs

8WHY|1|A|G|27
8WHY|1|A|C|28
*
8WHY|1|A|G|562
8WHY|1|A|U|563
8WHY|1|A|G|564
8WHY|1|A|A|565
8WHY|1|A|A|566
8WHY|1|A|A|567
8WHY|1|A|A|568
8WHY|1|A|G|569
*
8WHY|1|A|C|596
8WHY|1|A|C|597

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L20

Chain V

50S ribosomal protein L22

Chain X

50S ribosomal protein L24