J3_8WHY_014
3D structure
- PDB id
- 8WHY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUUG*CGAUAGCGGAUUAGUAC*GGAAUG
- Length
- 27 nucleotides
- Bulged bases
- 8WHY|1|A|U|31, 8WHY|1|A|U|536, 8WHY|1|A|U|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WHY_014 not in the Motif Atlas
- Homologous match to J3_5J7L_067
- Geometric discrepancy: 0.2453
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8WHY|1|A|C|29
8WHY|1|A|U|30
8WHY|1|A|U|31
8WHY|1|A|G|32
*
8WHY|1|A|C|533
8WHY|1|A|G|534
8WHY|1|A|A|535
8WHY|1|A|U|536
8WHY|1|A|A|537
8WHY|1|A|G|538
8WHY|1|A|C|539
8WHY|1|A|G|540
8WHY|1|A|G|541
8WHY|1|A|A|542
8WHY|1|A|U|543
8WHY|1|A|U|544
8WHY|1|A|A|545
8WHY|1|A|G|546
8WHY|1|A|U|547
8WHY|1|A|A|548
8WHY|1|A|C|549
*
8WHY|1|A|G|556
8WHY|1|A|G|557
8WHY|1|A|A|558
8WHY|1|A|A|559
8WHY|1|A|U|560
8WHY|1|A|G|561
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 7
- 50S ribosomal protein L34
- Chain G
- 50S ribosomal protein L4
- Chain T
- 50S ribosomal protein L20
- Chain W
- 50S ribosomal protein L23
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