J3_8WHY_017

3D structure

PDB id

8WHY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAA*UGCCGUAGAC*GGUAC

Length

20 nucleotides

Bulged bases

8WHY|1|A|U|403

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WHY_017 not in the Motif Atlas

Homologous match to J3_4WF9_015

Geometric discrepancy: 0.1052

The information below is about J3_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

8WHY|1|A|G|378
8WHY|1|A|G|379
8WHY|1|A|A|380
8WHY|1|A|A|381
8WHY|1|A|A|382
*
8WHY|1|A|U|398
8WHY|1|A|G|399
8WHY|1|A|C|400
8WHY|1|A|C|401
8WHY|1|A|G|402
8WHY|1|A|U|403
8WHY|1|A|A|404
8WHY|1|A|G|405
8WHY|1|A|A|406
8WHY|1|A|C|407
*
8WHY|1|A|G|419
8WHY|1|A|G|420
8WHY|1|A|U|421
8WHY|1|A|A|422
8WHY|1|A|C|423

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4

Chain X

50S ribosomal protein L24