J3_8WI9_001
3D structure
- PDB id
- 8WI9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUAG*CGUAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 8WI9|1|a|U|853, 8WI9|1|a|A|855
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8WI9_001 not in the Motif Atlas
- Homologous match to J3_5J7L_004
- Geometric discrepancy: 0.1438
- The information below is about J3_5J7L_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.4
- Basepair signature
- cWW-tWW-tHS-F-cWW-tHS-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
8WI9|1|a|C|806
8WI9|1|a|U|807
8WI9|1|a|A|808
8WI9|1|a|G|809
*
8WI9|1|a|C|839
8WI9|1|a|G|840
8WI9|1|a|U|841
8WI9|1|a|A|842
8WI9|1|a|G|843
*
8WI9|1|a|C|850
8WI9|1|a|A|851
8WI9|1|a|U|852
8WI9|1|a|U|853
8WI9|1|a|A|854
8WI9|1|a|A|855
8WI9|1|a|G|856
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S8
Coloring options: