J3_8WIB_005

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

8WIB|1|A|A|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8WIB_005 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.0845

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

8WIB|1|A|C|1421
8WIB|1|A|A|1422
8WIB|1|A|A|1423
8WIB|1|A|G|1424
*
8WIB|1|A|C|1823
8WIB|1|A|C|1824
8WIB|1|A|C|1825
8WIB|1|A|A|1826
8WIB|1|A|A|1827
8WIB|1|A|A|1828
8WIB|1|A|C|1829
*
8WIB|1|A|G|1838
8WIB|1|A|U|1839
8WIB|1|A|G|1840

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34